CRAN Package Check Results for Package easyDifferentialGeneCoexpression

Last updated on 2022-10-02 02:49:09 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 44.47 397.55 442.02 OK
r-devel-linux-x86_64-debian-gcc 1.0 40.13 300.07 340.20 OK
r-devel-linux-x86_64-fedora-clang 1.0 579.47 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0 560.65 NOTE
r-devel-windows-x86_64 1.0 175.00 579.00 754.00 OK
r-patched-linux-x86_64 1.0 43.95 376.56 420.51 OK
r-release-linux-x86_64 1.0 31.22 374.71 405.93 OK
r-release-macos-arm64 1.0 5.00 ERROR
r-release-macos-x86_64 1.0 6.00 ERROR
r-release-windows-x86_64 1.0 197.00 409.00 606.00 ERROR
r-oldrel-macos-arm64 1.0 9.00 ERROR
r-oldrel-macos-x86_64 1.0 11.00 ERROR
r-oldrel-windows-ix86+x86_64 1.0 93.00 377.00 470.00 OK

Check Details

Version: 1.0
Check: dependencies in R code
Result: NOTE
    Namespaces in Imports field not imported from:
     ‘R.utils’ ‘stringi’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0
Check: package dependencies
Result: ERROR
    Package required but not available: ‘diffcoexp’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 1.0
Check: examples
Result: ERROR
    Running examples in 'easyDifferentialGeneCoexpression-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: easyDifferentialGeneCoexpression
    > ### Title: Function that computes the differential coexpression of a list
    > ### of probesets in a specific dataset and returns the most significant
    > ### pairs
    > ### Aliases: easyDifferentialGeneCoexpression
    >
    > ### ** Examples
    >
    >
    > probesetList <- c("200738_s_at", "217356_s_at", "206686_at")
    > verboseFlag <- "TRUE"
    > batchCorrection <- "TRUE"
    > signDiffCoexpressGenePairs <- easyDifferentialGeneCoexpression(probesetList,
    + "GSE3268", "description", "Normal", "Tumor", verboseFlag)
    Processed URL: https://ftp.ncbi.nlm.nih.gov/geo/series/GSE3nnn/GSE3268
    Error in open.connection(x, "rb") :
     Timeout was reached: [ftp.ncbi.nlm.nih.gov] Operation timed out after 10007 milliseconds with 0 out of 0 bytes received
    Calls: easyDifferentialGeneCoexpression ... getAndParseGSEMatrices -> getDirListing -> <Anonymous> -> read_html.default
    Execution halted
Flavor: r-release-windows-x86_64