CRAN Package Check Results for Package ergm

Last updated on 2021-07-26 02:48:47 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 4.0.1 71.66 611.87 683.53 OK
r-devel-linux-x86_64-debian-gcc 4.0.1 58.63 455.31 513.94 OK
r-devel-linux-x86_64-fedora-clang 4.0.1 799.53 NOTE
r-devel-linux-x86_64-fedora-gcc 4.0.1 792.46 OK
r-devel-windows-x86_64 4.0.1 117.00 150.00 267.00 NOTE --no-examples --no-tests --no-vignettes
r-devel-windows-x86_64-gcc10-UCRT 4.0.1 OK
r-patched-linux-x86_64 4.0.1 74.05 575.71 649.76 OK
r-patched-solaris-x86 4.0.1 1060.90 NOTE
r-release-linux-x86_64 4.0.1 66.90 577.59 644.49 OK
r-release-macos-arm64 4.0.1 WARN
r-release-macos-x86_64 4.0.1 NOTE
r-release-windows-ix86+x86_64 4.0.1 193.00 161.00 354.00 NOTE --no-examples --no-tests --no-vignettes
r-oldrel-macos-x86_64 4.0.1 NOTE
r-oldrel-windows-ix86+x86_64 4.0.1 154.00 214.00 368.00 NOTE --no-examples --no-tests --no-vignettes

Additional issues

clang-UBSAN

Check Details

Version: 4.0.1
Check: installed package size
Result: NOTE
     installed size is 7.2Mb
     sub-directories of 1Mb or more:
     R 1.1Mb
     doc 2.2Mb
     libs 2.7Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-patched-solaris-x86, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 4.0.1
Flags: --no-examples --no-tests --no-vignettes
Check: installed package size
Result: NOTE
     installed size is 5.1Mb
     sub-directories of 1Mb or more:
     R 1.0Mb
     doc 2.1Mb
Flavors: r-devel-windows-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 4.0.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘Rmpi’
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 4.0.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘Network-Callback-API.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    --- finished re-building ‘Network-Callback-API.Rmd’
    
    --- re-building ‘Proposal-Lookup-API.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    --- finished re-building ‘Proposal-Lookup-API.Rmd’
    
    --- re-building ‘Terms-API.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    --- finished re-building ‘Terms-API.Rmd’
    
    --- re-building ‘ergm-term-crossRef.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    --- finished re-building ‘ergm-term-crossRef.Rmd’
    
    --- re-building ‘ergm.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Starting maximum pseudolikelihood estimation (MPLE):
    Evaluating the predictor and response matrix.
    Maximizing the pseudolikelihood.
    Finished MPLE.
    Starting Monte Carlo maximum likelihood estimation (MCMLE):
    Iteration 1 of at most 60:
    Optimizing with step length 1.0000.
    The log-likelihood improved by 0.0314.
    Convergence test p-value: 0.0004. Converged with 99% confidence.
    Finished MCMLE.
    Evaluating log-likelihood at the estimate. Fitting the dyad-independent submodel...
    Bridging between the dyad-independent submodel and the full model...
    Setting up bridge sampling...
    Using 16 bridges: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 .
    Bridging finished.
    This model was fit using MCMC. To examine model diagnostics and
    check for degeneracy, use the mcmc.diagnostics() function.
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Starting maximum pseudolikelihood estimation (MPLE):
    Evaluating the predictor and response matrix.
    Maximizing the pseudolikelihood.
    Finished MPLE.
    Starting Monte Carlo maximum likelihood estimation (MCMLE):
    Iteration 1 of at most 60:
    Optimizing with step length 1.0000.
    The log-likelihood improved by 0.0051.
    Convergence test p-value: < 0.0001. Converged with 99% confidence.
    Finished MCMLE.
    Evaluating log-likelihood at the estimate. Fitting the dyad-independent submodel...
    Bridging between the dyad-independent submodel and the full model...
    Setting up bridge sampling...
    Using 16 bridges: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 .
    Bridging finished.
    This model was fit using MCMC. To examine model diagnostics and
    check for degeneracy, use the mcmc.diagnostics() function.
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Starting maximum pseudolikelihood estimation (MPLE):
    Evaluating the predictor and response matrix.
    Maximizing the pseudolikelihood.
    Finished MPLE.
    Starting Monte Carlo maximum likelihood estimation (MCMLE):
    Iteration 1 of at most 60:
    Optimizing with step length 1.0000.
    The log-likelihood improved by 0.2494.
    Estimating equations are not within tolerance region.
    Iteration 2 of at most 60:
    Optimizing with step length 1.0000.
    The log-likelihood improved by 0.0074.
    Convergence test p-value: 0.0002. Converged with 99% confidence.
    Finished MCMLE.
    Evaluating log-likelihood at the estimate. Fitting the dyad-independent submodel...
    Bridging between the dyad-independent submodel and the full model...
    Setting up bridge sampling...
    Using 16 bridges: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 .
    Bridging finished.
    This model was fit using MCMC. To examine model diagnostics and
    check for degeneracy, use the mcmc.diagnostics() function.
    Quitting from lines 536-540 (ergm.Rmd)
    Error: processing vignette 'ergm.Rmd' failed with diagnostics:
    polygon edge not found
    --- failed re-building ‘ergm.Rmd’
    
    --- re-building ‘nodal_attributes.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    Loading required package: network
    
    'network' 1.17.1 (2021-06-12), part of the Statnet Project
    * 'news(package="network")' for changes since last version
    * 'citation("network")' for citation information
    * 'https://statnet.org' for help, support, and other information
    
    
    'ergm' 4.0.1 (2021-06-20), part of the Statnet Project
    * 'news(package="ergm")' for changes since last version
    * 'citation("ergm")' for citation information
    * 'https://statnet.org' for help, support, and other information
    
    'ergm' 4 is a major update that introduces some backwards-incompatible
    changes. Please type 'news(package="ergm")' for a list of major
    changes.
    
    --- finished re-building ‘nodal_attributes.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘ergm.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-macos-arm64