CRAN Package Check Results for Package glmmTMB

Last updated on 2023-02-02 02:51:10 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.5 247.89 303.79 551.68 OK
r-devel-linux-x86_64-debian-gcc 1.1.5 209.81 236.89 446.70 OK
r-devel-linux-x86_64-fedora-clang 1.1.5 672.17 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1.5 731.61 OK
r-devel-windows-x86_64 1.1.5 270.00 357.00 627.00 NOTE --no-vignettes
r-patched-linux-x86_64 1.1.5 231.25 284.09 515.34 OK
r-release-linux-x86_64 1.1.5 212.65 259.40 472.05 OK
r-release-macos-arm64 1.1.5 164.00 WARN
r-release-macos-x86_64 1.1.5 232.00 WARN
r-release-windows-x86_64 1.1.5 272.00 354.00 626.00 NOTE --no-vignettes
r-oldrel-macos-arm64 1.1.5 169.00 WARN
r-oldrel-macos-x86_64 1.1.5 249.00 WARN
r-oldrel-windows-ix86+x86_64 1.1.5 568.00 418.00 986.00 NOTE --no-vignettes

Check Details

Version: 1.1.5
Check: installed package size
Result: NOTE
     installed size is 11.1Mb
     sub-directories of 1Mb or more:
     libs 6.2Mb
     test_data 2.2Mb
     vignette_data 1.1Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 1.1.5
Flags: --no-vignettes
Check: installed package size
Result: NOTE
     installed size is 9.1Mb
     sub-directories of 1Mb or more:
     libs 4.3Mb
     test_data 2.2Mb
     vignette_data 1.1Mb
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1.5
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘covstruct.rmd’ using rmarkdown
    --- finished re-building ‘covstruct.rmd’
    
    --- re-building ‘hacking.rmd’ using rmarkdown
    --- finished re-building ‘hacking.rmd’
    
    --- re-building ‘mcmc.rmd’ using rmarkdown
    --- finished re-building ‘mcmc.rmd’
    
    --- re-building ‘miscEx.rmd’ using rmarkdown
    --- finished re-building ‘miscEx.rmd’
    
    --- re-building ‘parallel.rmd’ using rmarkdown
    --- finished re-building ‘parallel.rmd’
    
    --- re-building ‘sim.rmd’ using rmarkdown
    --- finished re-building ‘sim.rmd’
    
    --- re-building ‘troubleshooting.rmd’ using rmarkdown
    --- finished re-building ‘troubleshooting.rmd’
    
    --- re-building ‘glmmTMB.Rnw’ using knitr
    Loading required package: stats4
    Error: processing vignette 'glmmTMB.Rnw' failed with diagnostics:
    Running 'texi2dvi' on 'glmmTMB.tex' failed.
    LaTeX errors:
    ! Undefined control sequence.
    l.80 \NewCommandCopy
     \Rhref\href
    ?
    ! Emergency stop.
    ! Emergency stop.
    l.80 \NewCommandCopy
     \Rhref\href
    End of file on the terminal!
    
    ! ==> Fatal error occurred, no output PDF file produced!
    --- failed re-building ‘glmmTMB.Rnw’
    
    --- re-building ‘model_evaluation.Rnw’ using knitr
    Loading required package: carData
    lattice theme set by effectsTheme()
    See ?effectsTheme for details.
    Loading required package: mvtnorm
    Loading required package: survival
    Loading required package: TH.data
    
    Attaching package: 'TH.data'
    
    The following object is masked from 'package:MASS':
    
     geyser
    
    
    Attaching package: 'MuMIn'
    
    The following object is masked from 'package:bbmle':
    
     AICc
    
    The following object is masked from 'package:mvabund':
    
     coefplot
    
    This is DHARMa 0.4.6. For overview type '?DHARMa'. For recent changes, type news(package = 'DHARMa')
    Version: 1.38.6
    Date: 2022-04-06
    Author: Philip Leifeld (University of Essex)
    
    Consider submitting praise using the praise or praise_interactive functions.
    Please cite the JSS article in your publications -- see citation("texreg").
    
    Attaching package: 'huxtable'
    
    The following objects are masked from 'package:xtable':
    
     align, align<-, caption, caption<-, label, label<-, sanitize
    
    The following object is masked from 'package:ggplot2':
    
     theme_grey
    
    --- finished re-building ‘model_evaluation.Rnw’
    
    SUMMARY: processing the following file failed:
     ‘glmmTMB.Rnw’
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-release-macos-arm64, r-release-macos-x86_64

Version: 1.1.5
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘covstruct.rmd’ using rmarkdown
    --- finished re-building ‘covstruct.rmd’
    
    --- re-building ‘hacking.rmd’ using rmarkdown
    --- finished re-building ‘hacking.rmd’
    
    --- re-building ‘mcmc.rmd’ using rmarkdown
    --- finished re-building ‘mcmc.rmd’
    
    --- re-building ‘miscEx.rmd’ using rmarkdown
    --- finished re-building ‘miscEx.rmd’
    
    --- re-building ‘parallel.rmd’ using rmarkdown
    --- finished re-building ‘parallel.rmd’
    
    --- re-building ‘sim.rmd’ using rmarkdown
    --- finished re-building ‘sim.rmd’
    
    --- re-building ‘troubleshooting.rmd’ using rmarkdown
    --- finished re-building ‘troubleshooting.rmd’
    
    --- re-building ‘glmmTMB.Rnw’ using knitr
    Loading required package: stats4
    Error: processing vignette 'glmmTMB.Rnw' failed with diagnostics:
    Running 'texi2dvi' on 'glmmTMB.tex' failed.
    LaTeX errors:
    ! Undefined control sequence.
    l.80 \NewCommandCopy
     \Rhref\href
    ?
    ! Emergency stop.
    ! Emergency stop.
    l.80 \NewCommandCopy
     \Rhref\href
    End of file on the terminal!
    
    ! ==> Fatal error occurred, no output PDF file produced!
    --- failed re-building ‘glmmTMB.Rnw’
    
    --- re-building ‘model_evaluation.Rnw’ using knitr
    Loading required package: carData
    lattice theme set by effectsTheme()
    See ?effectsTheme for details.
    Loading required package: mvtnorm
    Loading required package: survival
    Loading required package: TH.data
    Loading required package: MASS
    
    Attaching package: 'TH.data'
    
    The following object is masked from 'package:MASS':
    
     geyser
    
    This is DHARMa 0.4.6. For overview type '?DHARMa'. For recent changes, type news(package = 'DHARMa')
    Version: 1.38.6
    Date: 2022-04-06
    Author: Philip Leifeld (University of Essex)
    
    Consider submitting praise using the praise or praise_interactive functions.
    Please cite the JSS article in your publications -- see citation("texreg").
    
    Attaching package: 'huxtable'
    
    The following objects are masked from 'package:xtable':
    
     align, align<-, caption, caption<-, label, label<-, sanitize
    
    The following object is masked from 'package:ggplot2':
    
     theme_grey
    
    --- finished re-building ‘model_evaluation.Rnw’
    
    SUMMARY: processing the following file failed:
     ‘glmmTMB.Rnw’
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64