CRAN Package Check Results for Package supernova

Last updated on 2022-01-29 02:50:04 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.5.0 7.32 126.25 133.57 OK
r-devel-linux-x86_64-debian-gcc 2.5.0 5.02 90.71 95.73 OK
r-devel-linux-x86_64-fedora-clang 2.5.1 123.35 NOTE
r-devel-linux-x86_64-fedora-gcc 2.5.1 66.51 NOTE
r-devel-windows-x86_64-new-UL 2.5.0 128.00 155.00 283.00 OK
r-devel-windows-x86_64-new-TK 2.5.0 ERROR
r-patched-linux-x86_64 2.5.0 8.47 87.59 96.06 OK
r-release-linux-x86_64 2.5.0 5.43 86.92 92.35 OK
r-release-macos-arm64 2.5.1 NOTE
r-release-macos-x86_64 2.5.0 NOTE
r-release-windows-ix86+x86_64 2.5.0 15.00 107.00 122.00 OK
r-oldrel-macos-x86_64 2.5.0 NOTE
r-oldrel-windows-ix86+x86_64 2.5.0 15.00 107.00 122.00 OK

Check Details

Version: 2.5.1
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘methods’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-macos-arm64

Version: 2.5.0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking: 'car', 'lme4'
Flavor: r-devel-windows-x86_64-new-TK

Version: 2.5.0
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: 'methods'
     All declared Imports should be used.
Flavors: r-devel-windows-x86_64-new-TK, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 2.5.0
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: 'lme4'
Flavor: r-devel-windows-x86_64-new-TK

Version: 2.5.0
Check: tests
Result: ERROR
     Running 'testthat.R'
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(supernova)
     >
     > test_check("supernova")
     [ FAIL 23 | WARN 21 | SKIP 13 | PASS 181 ]
    
     ══ Skipped tests ═══════════════════════════════════════════════════════════════
     • On CRAN (12)
     • empty test (1)
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error (test-print.supernova.R:98:3): nested repeated measures tables are beautifully formatted ──
     <packageNotFoundError/error/condition>
     Error in `loadNamespace(x)`: there is no package called 'lme4'
     Backtrace:
     █
     1. ├─supernova:::fit_lmer(value ~ instructions + (1 | group), data = get_data("jmr_ex11.1")) test-print.supernova.R:98:2
     2. └─base::loadNamespace(x) test-print.supernova.R:9:2
     3. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     4. └─base:::withOneRestart(expr, restarts[[1L]])
     5. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test-print.supernova.R:128:3): crossed repeated measures tables are beautifully formatted ──
     <packageNotFoundError/error/condition>
     Error in `loadNamespace(x)`: there is no package called 'lme4'
     Backtrace:
     █
     1. ├─supernova:::fit_lmer(...) test-print.supernova.R:128:2
     2. └─base::loadNamespace(x) test-print.supernova.R:9:2
     3. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     4. └─base:::withOneRestart(expr, restarts[[1L]])
     5. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test-supernova.lmerMod.R:36:3): cannot compute SS types other than Type III for lmerMod ──
     <packageNotFoundError/error/condition>
     Error in `loadNamespace(x)`: there is no package called 'lme4'
     Backtrace:
     █
     1. ├─supernova:::fit_lmer(...) test-supernova.lmerMod.R:36:2
     2. └─base::loadNamespace(x) test-supernova.lmerMod.R:22:2
     3. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     4. └─base:::withOneRestart(expr, restarts[[1L]])
     5. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test-supernova.lmerMod.R:46:3): there is no verbose print for lmerMod (warn and switch off) ──
     <packageNotFoundError/error/condition>
     Error in `loadNamespace(x)`: there is no package called 'lme4'
     Backtrace:
     █
     1. ├─supernova:::fit_lmer(...) test-supernova.lmerMod.R:46:2
     2. └─base::loadNamespace(x) test-supernova.lmerMod.R:22:2
     3. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     4. └─base:::withOneRestart(expr, restarts[[1L]])
     5. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test-supernova.lmerMod.R:58:3): supernova object has table, fit, and models ──
     <packageNotFoundError/error/condition>
     Error in `loadNamespace(x)`: there is no package called 'lme4'
     Backtrace:
     █
     1. ├─supernova:::fit_lmer(...) test-supernova.lmerMod.R:58:2
     2. └─base::loadNamespace(x) test-supernova.lmerMod.R:22:2
     3. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     4. └─base:::withOneRestart(expr, restarts[[1L]])
     5. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test-supernova.lmerMod.R:84:3): magrittr can pipe lmer() to supernova ──
     <packageNotFoundError/error/condition>
     Error in `loadNamespace(x)`: there is no package called 'lme4'
     Backtrace:
     █
     1. ├─`%>%`(...) test-supernova.lmerMod.R:84:2
     2. ├─testthat::expect_s3_class(., "supernova")
     3. │ └─testthat::quasi_label(enquo(object), arg = "object")
     4. │ └─rlang::eval_bare(expr, quo_get_env(quo))
     5. ├─supernova::supernova(.)
     6. ├─supernova:::fit_lmer(...)
     7. └─base::loadNamespace(x) test-supernova.lmerMod.R:22:2
     8. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     9. └─base:::withOneRestart(expr, restarts[[1L]])
     10. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test-supernova.lmerMod.R:101:3): magrittr can pipe data to lm() to supernova ──
     <packageNotFoundError/error/condition>
     Error in `loadNamespace(x)`: there is no package called 'lme4'
     Backtrace:
     █
     1. ├─`%>%`(...) test-supernova.lmerMod.R:101:2
     2. ├─testthat::expect_s3_class(., "supernova")
     3. │ └─testthat::quasi_label(enquo(object), arg = "object")
     4. │ └─rlang::eval_bare(expr, quo_get_env(quo))
     5. ├─supernova::supernova(.)
     6. ├─supernova:::fit_lmer(...)
     7. └─base::loadNamespace(x) test-supernova.lmerMod.R:22:2
     8. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     9. └─base:::withOneRestart(expr, restarts[[1L]])
     10. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test-supernova.lmerMod.R:111:3): supernova can test simple nested designs ──
     <packageNotFoundError/error/condition>
     Error in `loadNamespace(x)`: there is no package called 'lme4'
     Backtrace:
     █
     1. ├─supernova:::fit_lmer(value ~ instructions + (1 | group), data = get_data("jmr_ex11.1")) test-supernova.lmerMod.R:111:2
     2. └─base::loadNamespace(x) test-supernova.lmerMod.R:22:2
     3. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     4. └─base:::withOneRestart(expr, restarts[[1L]])
     5. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test-supernova.lmerMod.R:124:3): supernova can test simple crossed designs ──
     <packageNotFoundError/error/condition>
     Error in `loadNamespace(x)`: there is no package called 'lme4'
     Backtrace:
     █
     1. ├─supernova:::fit_lmer(...) test-supernova.lmerMod.R:124:2
     2. └─base::loadNamespace(x) test-supernova.lmerMod.R:22:2
     3. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     4. └─base:::withOneRestart(expr, restarts[[1L]])
     5. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test-supernova.lmerMod.R:137:3): supernova can test multiple crossed designs ──
     <packageNotFoundError/error/condition>
     Error in `loadNamespace(x)`: there is no package called 'lme4'
     Backtrace:
     █
     1. ├─supernova:::fit_lmer(...) test-supernova.lmerMod.R:137:2
     2. └─base::loadNamespace(x) test-supernova.lmerMod.R:22:2
     3. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     4. └─base:::withOneRestart(expr, restarts[[1L]])
     5. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test-supernova.lmerMod.R:150:3): supernova can test mixed designs ────
     <packageNotFoundError/error/condition>
     Error in `loadNamespace(x)`: there is no package called 'lme4'
     Backtrace:
     █
     1. ├─supernova:::fit_lmer(...) test-supernova.lmerMod.R:150:2
     2. └─base::loadNamespace(x) test-supernova.lmerMod.R:22:2
     3. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     4. └─base:::withOneRestart(expr, restarts[[1L]])
     5. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test-supernova.r:258:3): supernova calculates ANOVAs properly (including different SS types) ──
     <packageNotFoundError/error/condition>
     Error in `loadNamespace(x)`: there is no package called 'car'
     Backtrace:
     █
     1. ├─base::lapply(models_to_test, anova_tester_type_1) test-supernova.r:258:2
     2. │ └─supernova:::FUN(X[[i]], ...)
     3. │ └─supernova:::anova_tester(model, type = 1) test-supernova.r:257:25
     4. │ └─supernova:::expect_supernova(obj, type) test-supernova.r:254:4
     5. │ └─supernova:::expect_partials(object, type, ...) test-supernova.r:80:4
     6. │ └─supernova:::get_partials(object$fit, type = type) test-supernova.r:130:2
     7. │ └─base::suppressMessages(car::Anova) test-supernova.r:25:2
     8. │ └─base::withCallingHandlers(...)
     9. └─base::loadNamespace(x)
     10. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     11. └─base:::withOneRestart(expr, restarts[[1L]])
     12. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test-supernova.r:307:3): supernova uses listwise deletion for missing data ──
     <packageNotFoundError/error/condition>
     Error in `loadNamespace(x)`: there is no package called 'car'
     Backtrace:
     █
     1. ├─supernova:::expect_supernova(two_way) test-supernova.r:307:2
     2. │ └─supernova:::expect_partials(object, type, ...) test-supernova.r:80:4
     3. │ └─supernova:::get_partials(object$fit, type = type) test-supernova.r:130:2
     4. │ └─base::suppressMessages(car::Anova) test-supernova.r:25:2
     5. │ └─base::withCallingHandlers(...)
     6. └─base::loadNamespace(x) test-supernova.r:25:2
     7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     8. └─base:::withOneRestart(expr, restarts[[1L]])
     9. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test-supernova.r:316:3): supernova makes correct calculations for unbalanced data ──
     <packageNotFoundError/error/condition>
     Error in `loadNamespace(x)`: there is no package called 'car'
     Backtrace:
     █
     1. ├─supernova:::expect_supernova(two_way) test-supernova.r:316:2
     2. │ └─supernova:::expect_partials(object, type, ...) test-supernova.r:80:4
     3. │ └─supernova:::get_partials(object$fit, type = type) test-supernova.r:130:2
     4. │ └─base::suppressMessages(car::Anova) test-supernova.r:25:2
     5. │ └─base::withCallingHandlers(...)
     6. └─base::loadNamespace(x) test-supernova.r:25:2
     7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     8. └─base:::withOneRestart(expr, restarts[[1L]])
     9. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test-utils-formula.R:69:3): frm_fixed_terms only extracts non-random terms from the formula ──
     <packageNotFoundError/error/condition>
     Error in `loadNamespace(x)`: there is no package called 'lme4'
     Backtrace:
     █
     1. ├─testthat::expect_equal(...) test-utils-formula.R:69:2
     2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
     3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
     4. ├─supernova:::frm_fixed_terms(y ~ a + (1 | group))
     5. │ ├─base::setdiff(frm_terms(frm), frm_random_terms(frm))
     6. │ │ └─base::as.vector(y)
     7. │ └─supernova:::frm_random_terms(frm)
     8. └─base::loadNamespace(x)
     9. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     10. └─base:::withOneRestart(expr, restarts[[1L]])
     11. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test-utils-formula.R:73:3): frm_random_terms only extracts random terms from the formula ──
     <packageNotFoundError/error/condition>
     Error in `loadNamespace(x)`: there is no package called 'lme4'
     Backtrace:
     █
     1. ├─testthat::expect_equal(...) test-utils-formula.R:73:2
     2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
     3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
     4. ├─supernova:::frm_random_terms(y ~ a + (1 | group))
     5. └─base::loadNamespace(x)
     6. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     7. └─base:::withOneRestart(expr, restarts[[1L]])
     8. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test-utils-formula.R:81:3): frm_fixed_vars extracts only the variables used in fixed terms ──
     <packageNotFoundError/error/condition>
     Error in `loadNamespace(x)`: there is no package called 'lme4'
     Backtrace:
     █
     1. ├─testthat::expect_equal(...) test-utils-formula.R:81:2
     2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
     3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
     4. ├─supernova:::frm_fixed_vars(y ~ a + a:b + b:c + (1 | group))
     5. └─base::loadNamespace(x)
     6. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     7. └─base:::withOneRestart(expr, restarts[[1L]])
     8. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test-utils-formula.R:85:3): frm_random_vars extracts only the variables used in random terms ──
     <packageNotFoundError/error/condition>
     Error in `loadNamespace(x)`: there is no package called 'lme4'
     Backtrace:
     █
     1. ├─testthat::expect_equal(...) test-utils-formula.R:85:2
     2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
     3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
     4. ├─supernova:::frm_random_vars(y ~ a + a:b + b:c + (1 | group))
     5. └─base::loadNamespace(x)
     6. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     7. └─base:::withOneRestart(expr, restarts[[1L]])
     8. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test-variables.R:127:3): variables are extracted from simple nested models ──
     <packageNotFoundError/error/condition>
     Error in `loadNamespace(x)`: there is no package called 'lme4'
     Backtrace:
     █
     1. ├─supernova:::fit_lmer(value ~ instructions + (1 | group), data = get_data("jmr_ex11.1")) test-variables.R:127:2
     2. └─base::loadNamespace(x) test-variables.R:12:2
     3. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     4. └─base:::withOneRestart(expr, restarts[[1L]])
     5. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test-variables.R:142:3): variables are extracted from simple crossed models ──
     <packageNotFoundError/error/condition>
     Error in `loadNamespace(x)`: there is no package called 'lme4'
     Backtrace:
     █
     1. ├─supernova:::fit_lmer(...) test-variables.R:142:2
     2. └─base::loadNamespace(x) test-variables.R:12:2
     3. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     4. └─base:::withOneRestart(expr, restarts[[1L]])
     5. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test-variables.R:157:3): variables are extracted from simple crossed models with interactions ──
     <packageNotFoundError/error/condition>
     Error in `loadNamespace(x)`: there is no package called 'lme4'
     Backtrace:
     █
     1. ├─supernova:::fit_lmer(recall ~ type * time + (1 | subject), data = get_data("jmr_ex11.17")) test-variables.R:157:2
     2. └─base::loadNamespace(x) test-variables.R:12:2
     3. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     4. └─base:::withOneRestart(expr, restarts[[1L]])
     5. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test-variables.R:172:3): variables are extracted from models with multiple crossed variables ──
     <packageNotFoundError/error/condition>
     Error in `loadNamespace(x)`: there is no package called 'lme4'
     Backtrace:
     █
     1. ├─supernova:::fit_lmer(...) test-variables.R:172:2
     2. └─base::loadNamespace(x) test-variables.R:12:2
     3. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     4. └─base:::withOneRestart(expr, restarts[[1L]])
     5. └─base:::doWithOneRestart(return(expr), restart)
     ── Error (test-variables.R:190:3): variables are extracted from mixed models with interactions ──
     <packageNotFoundError/error/condition>
     Error in `loadNamespace(x)`: there is no package called 'lme4'
     Backtrace:
     █
     1. ├─supernova:::fit_lmer(...) test-variables.R:190:2
     2. └─base::loadNamespace(x) test-variables.R:12:2
     3. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     4. └─base:::withOneRestart(expr, restarts[[1L]])
     5. └─base:::doWithOneRestart(return(expr), restart)
    
     [ FAIL 23 | WARN 21 | SKIP 13 | PASS 181 ]
     Deleting unused snapshots:
     * pairwise/bonferroni-one-variable.svg
     * pairwise/multiple-plots-raceethnic.svg
     * pairwise/multiple-plots-sex-raceethnic.svg
     * pairwise/t-test-one-variable.svg
     Error: Test failures
     Execution halted
Flavor: r-devel-windows-x86_64-new-TK