genekitr: Gene Analysis Toolkit in R

An analysis toolkit focused on genes. It mainly includes five features (search, convert, analysis, plot, and export). The user just needs to input feature id ('entrez', 'symbol', 'ensembl' or 'uniprot') to retrieve feature information and PubMed records, to convert id types, to easily do enrichment analysis and draw publication-level plots of GO, KEGG and GSEA, to plot group interaction and export results as sheets in one excel file to easily share and communicate with others.

Version: 0.8.5
Depends: R (≥ 4.0)
Imports: clusterProfiler, dplyr, europepmc, fst, ggplot2, ggraph, igraph, magrittr, openxlsx, stringr, stringi, tidyr, VennDiagram, rlang
Suggests: AnnotationDbi, BiocManager, cowplot, DOSE, data.table, easyPubMed, forcats, fgsea, futile.logger, ggplotify, ggsci, ggupset, ggrepel, ggridges, ggnewscale, GOplot, GOSemSim, msigdbr, RColorBrewer, rappdirs, rentrez, reshape2, rio, rrvgo, scales, stats, testthat (≥ 3.0.0), tibble, knitr, rmarkdown
Published: 2022-05-27
Author: Yunze Liu ORCID iD [aut, cre]
Maintainer: Yunze Liu <jieandze1314 at gmail.com>
BugReports: https://github.com/GangLiLab/genekitr/issues
License: GPL-3
URL: https://github.com/GangLiLab/genekitr
NeedsCompilation: no
Materials: README
CRAN checks: genekitr results

Documentation:

Reference manual: genekitr.pdf

Downloads:

Package source: genekitr_0.8.5.tar.gz
Windows binaries: r-devel: genekitr_0.8.5.zip, r-release: genekitr_0.8.5.zip, r-oldrel: genekitr_0.8.5.zip
macOS binaries: r-release (arm64): genekitr_0.8.5.tgz, r-oldrel (arm64): genekitr_0.8.5.tgz, r-release (x86_64): genekitr_0.8.5.tgz, r-oldrel (x86_64): genekitr_0.8.5.tgz
Old sources: genekitr archive

Linking:

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