osmose: Object Oriented Simulator of Marine Ecosystems

The multispecies and individual-based model (IBM) 'OSMOSE' (Shin and Curry (2001) <doi:10.1016/S0990-7440(01)01106-8> and Shin and Curry (2004) <doi:10.1139/f03-154>) focuses on fish species. This model assumes opportunistic predation based on spatial co-occurrence and size adequacy between a predator and its prey (size-based opportunistic predation). It represents fish individuals grouped into schools, which are characterized by their size, weight, age, taxonomy and geographical location (2D model), and which undergo major processes of fish life cycle (growth, explicit predation, natural and starvation mortalities, reproduction and migration) and fishing exploitation. The model needs basic biological parameters that are often available for a wide range of species, and which can be found in 'FishBase' for instance (see <http://www.fishbase.org/search.php>), and fish spatial distribution data. This package provides tools to build and run simulations using the 'OSMOSE' model.

Version: 3.3.4
Depends: R (≥ 3.5.0)
Imports: graphics, grDevices, rlist, stats, knitr, rmarkdown, stringr, utils, ncdf4, mgcv, fields
Published: 2020-04-28
Author: Yunne-Jai Shin ORCID iD [aut], Travers Morgane ORCID iD [aut], Verley Philippe ORCID iD [aut], Ricardo Oliveros-Ramos ORCID iD [aut], Laure Velez [aut], Nicolas Barrier ORCID iD [cre], Criscely Lujan [ctb], Michael Hurtado [ctb], Wencheng Lau-Medrano [ctb]
Maintainer: Nicolas Barrier <nicolas.barrier at ird.fr>
BugReports: https://github.com/osmose-model/osmose/issues
License: CeCILL
URL: http://www.osmose-model.org/
NeedsCompilation: no
SystemRequirements: Java (>= 8)
Materials: README NEWS
CRAN checks: osmose results

Downloads:

Reference manual: osmose.pdf
Vignettes: Creates a folder with basic files for a running. Then, run the model and read the outputs.
Plot method demonstration
Package source: osmose_3.3.4.tar.gz
Windows binaries: r-devel: osmose_3.3.4.zip, r-release: osmose_3.3.4.zip, r-oldrel: osmose_3.3.4.zip
macOS binaries: r-release (arm64): osmose_3.3.4.tgz, r-release (x86_64): osmose_3.3.4.tgz, r-oldrel: osmose_3.3.4.tgz
Old sources: osmose archive

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