vegan: Community Ecology Package

Ordination methods, diversity analysis and other functions for community and vegetation ecologists.

Version: 2.6-4
Depends: permute (≥ 0.9-0), lattice, R (≥ 3.4.0)
Imports: MASS, cluster, mgcv
Suggests: parallel, tcltk, knitr, markdown
Published: 2022-10-11
Author: Jari Oksanen [aut, cre], Gavin L. Simpson [aut], F. Guillaume Blanchet [aut], Roeland Kindt [aut], Pierre Legendre [aut], Peter R. Minchin [aut], R.B. O'Hara [aut], Peter Solymos [aut], M. Henry H. Stevens [aut], Eduard Szoecs [aut], Helene Wagner [aut], Matt Barbour [aut], Michael Bedward [aut], Ben Bolker [aut], Daniel Borcard [aut], Gustavo Carvalho [aut], Michael Chirico [aut], Miquel De Caceres [aut], Sebastien Durand [aut], Heloisa Beatriz Antoniazi Evangelista [aut], Rich FitzJohn [aut], Michael Friendly [aut], Brendan Furneaux [aut], Geoffrey Hannigan [aut], Mark O. Hill [aut], Leo Lahti [aut], Dan McGlinn [aut], Marie-Helene Ouellette [aut], Eduardo Ribeiro Cunha [aut], Tyler Smith [aut], Adrian Stier [aut], Cajo J.F. Ter Braak [aut], James Weedon [aut]
Maintainer: Jari Oksanen <jhoksane at gmail.com>
BugReports: https://github.com/vegandevs/vegan/issues
License: GPL-2
URL: https://github.com/vegandevs/vegan
NeedsCompilation: yes
Materials: NEWS
In views: Environmetrics, Phylogenetics, Psychometrics, Spatial
CRAN checks: vegan results

Documentation:

Reference manual: vegan.pdf
Vignettes: Design decisions and implementation
Diversity analysis in vegan
Introduction to ordination in vegan
Partition of Variation
vegan FAQ

Downloads:

Package source: vegan_2.6-4.tar.gz
Windows binaries: r-devel: vegan_2.6-4.zip, r-release: vegan_2.6-4.zip, r-oldrel: vegan_2.6-4.zip
macOS binaries: r-release (arm64): vegan_2.6-4.tgz, r-oldrel (arm64): vegan_2.6-4.tgz, r-release (x86_64): vegan_2.6-4.tgz, r-oldrel (x86_64): vegan_2.6-4.tgz
Old sources: vegan archive

Reverse dependencies:

Reverse depends: analogue, ausplotsR, BBI, BDMMAcorrect, betaper, BiodiversityR, bipartite, blender, cocorresp, CommEcol, dave, diathor, easyCODA, FD, FreeSortR, isopam, KnowBR, metacom, MiSPU, mpmcorrelogram, ordiBreadth, OTUbase, otuSummary, picante, rareNMtests, rdacca.hp, segRDA, SRS, vegan3d
Reverse imports: abseqR, adegenet, adespatial, aIc, AlleleShift, animalcules, aPCoA, Arothron, barcodetrackR, BAT, bingat, biogeo, biosurvey, CAGEr, canaper, cassandRa, cati, chemodiv, cml, CNVRG, codyn, combi, comsimitv, DarkDiv, dartR, dispRity, DiversityOccupancy, dynRB, ecospat, EcotoneFinder, edmcr, entropart, EvaluateCore, fieldRS, flowCHIC, flowCyBar, forams, fundiversity, gdm, GOCompare, goeveg, GPA, graph4lg, grapherator, GRNNs, GUniFrac, HierDpart, hilldiv, HMP, HTSSIP, iCAMP, LinkHD, Linnorm, Maaslin2, MapeBay, MBECS, mcMST, MEAL, MEclustnet, MEDITS, memgene, metacoder, metavizr, metrix, mFD, mia, microbial, microbiome, microbiomeExplorer, microbiomeMarker, MicrobiotaProcess, microeco, MIGSA, mirt, mixKernel, Momocs, MorphoTools2, NADA2, naturaList, netassoc, netcom, netZooR, NicheBarcoding, node2vec, nodiv, NST, omicplotR, paco, pagoo, palaeoSig, PathoStat, patternize, PCPS, pez, phyloregion, phyloseq, PolicyPortfolios, POMA, PopGenReport, poppr, powerTCR, ProjectionBasedClustering, QFASA, RaceID, Rarefy, recluster, rich, rioja, RPANDA, Rtapas, RTCC, RVAideMemoire, RVenn, scRepertoire, shapeR, sharpshootR, SigTree, smartsnp, soundecology, spaceNet, SparseLPM, spmoran, SSP, surveyvoi, SYNCSA, synergyfinder, tapnet, TraMineR, tspmeta, vcfR, vegclust, Xplortext, zetadiv
Reverse suggests: abdiv, bcp, betapart, bipartiteD3, codep, curatedMetagenomicData, dimRed, dissCqN, divDyn, EcoIndR, ecolottery, ecospace, ecostats, ecotraj, eHOF, enveomics.R, GCalignR, glottospace, GOsummaries, hagis, idar, interactiveDisplay, ISAnalytics, liayson, loe, mefa, metagenomeSeq, MiRKAT, MMUPHin, ordr, permute, phylotools, Platypus, primer, ProcMod, pRoloc, PtH2O2lipids, raptr, restoptr, Rraven, RRphylo, sads, shipunov, SoundShape, spaa, taxize, tidypaleo, vegdata, vegtable, WeightedCluster, yaImpute
Reverse enhances: labdsv

Linking:

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